PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020779
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 362aa    MW: 39056.5 Da    PI: 4.5806
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020779genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016334357123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ C+++F++   L++H +  H
  DCAR_020779 334 HTCNSCKRTFKSEVALESHNKAkH 357
                  79*****************88766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.863334361IPR007087Zinc finger, C2H2
PfamPF139121.8E-5334357IPR007087Zinc finger, C2H2
PROSITE patternPS000280336357IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEFWAAEVKA GESFKVKIDE NKALHLSQAC IGDVEKDIPV SICLYVKVDE KKLALGTLNS  60
KKLFQQSFDL VFDKTFEISH NWKNGTSDVD DSDAESDEDI PVIAANGGPP TEVKQEHVKA  120
SADKNSAADK QKDKEKAKIV EPRKAASSDT TDDSSEDDET SSEDDPKVSV KKDSAAGKQK  180
ANIVEPTKDV SSDDTDDSSD DDETSSEDDT KVSAEKVSAA GKQKAKIVDP KNDADSGDDD  240
AMSEDYSEEA DESDEDSDSD EDEETPVQVK SSKKRALTPA KKALPEKKAK LITPPKTDGK  300
KSSVHVATPY PSKQTGKTPA NKLNQQTPKT DGSHTCNSCK RTFKSEVALE SHNKAKHTGG  360
K*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254581.10.0PREDICTED: histone deacetylase HDT1-like isoform X1
SwissprotQ6V9I61e-31HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A164WJL50.0A0A164WJL5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.25e-18histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]