PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020594
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family G2-like
Protein Properties Length: 271aa    MW: 30241.1 Da    PI: 8.1763
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020594genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.73.5e-3089142155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  DCAR_020594  89 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMHLMSVDGLTRENVASHLQKYRL 142
                  59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.93486145IPR017930Myb domain
SuperFamilySSF466891.77E-1986146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-3088147IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-2490142IPR006447Myb domain, plants
PfamPF002491.7E-792141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MREDESNWFR KWEEQLPSPD ELMPLSQTLI TPHLAIAFHI NSTTGTSTIP PPQVHNSAPQ  60
PPPLPPFQSP NSGEFESSGG DEPARTLKRP RLVWTPQLHK RFVDAVAHLG IKNAVPKTIM  120
HLMSVDGLTR ENVASHLQKY RLYLKRMQQG NLSGHASSGD TATDHLFASS PVPAHFLHQG  180
RQNSEHFVPF VAVPVMQQQQ YHQQMAAQYR HVSPHFGSPP NEHSFVARQA PQQVQRMVMP  240
VHNSVASSYI DDLESANARK VLTLFPTGND *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-3289145157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255567.10.0PREDICTED: transcription factor PCL1-like
SwissprotO222104e-64MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A164WNT60.0A0A164WNT6_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000722131e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.18e-77G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]