PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020118
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 142aa    MW: 15632.3 Da    PI: 7.4392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020118genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-054163123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C + F+++  L  H++ H
  DCAR_020118 41 FPCNYCRRKFRSSQALGGHQNAH 63
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.42E-63968No hitNo description
PfamPF139121.8E-54163IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1574168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MSINLNLPSD DELNLQLLLD TSSSSSSSYP CWNSIEPPRI FPCNYCRRKF RSSQALGGHQ  60
NAHKLERTLA KKSRELSSGV RARAERNKES GSGDSTSVQP HGMGMGMELV ERFSSGETTK  120
YKGDDNVYSD ESGQLDLSLR L*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256765.11e-100PREDICTED: zinc finger protein 2
SwissprotQ392614e-21ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A161WVC83e-99A0A161WVC8_DAUCS; Uncharacterized protein
STRINGXP_009614282.13e-29(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88762128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-21zinc finger protein 2