PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019806
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bZIP
Protein Properties Length: 293aa    MW: 31898.1 Da    PI: 7.7957
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019806genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.63e-0989145561
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                  kr++r   NR +A rs +RK  +i eLe+k+++L++e ++L  +l   +     l++
  DCAR_019806  89 KRAKRILANRQSAARSKERKARYISELERKAQTLQTEATTLSAQLTLFQRDTTGLTN 145
                  9*****************************************998877666655555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-1585149IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.50787150IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-989143No hitNo description
PfamPF001701.2E-789135IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.6E-1089140No hitNo description
CDDcd147034.76E-2190139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MLNNIDDSPA FSLGNNNNNA GGGEGEKCSS SSNNITRPRH RYSNSVDSTT NSSSALLFNT  60
ANPNPTESIE AKKAMAPDKL AELWNLDPKR AKRILANRQS AARSKERKAR YISELERKAQ  120
TLQTEATTLS AQLTLFQRDT TGLTNENTEL KLRLQAMEQQ AQLRDALNDA LKQEVERLRV  180
ATGEMSTHSD AYELGIPHVP YYQSAFSPHH PQPGSGGPLN GQLSRFYSIQ SSMSNQQQHP  240
VLSAAANAQV LSETLQQDPL GRFQGLDISN RGSHLVKSEG PSVSASESSS TF*
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254004.10.0PREDICTED: transcription factor RF2b
SwissprotO228734e-81BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A164ZXA30.0A0A164ZXA3_DAUCS; Uncharacterized protein
STRINGXP_006486172.11e-116(Citrus sinensis)
STRINGXP_006435914.11e-116(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34252349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.13e-75bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]