PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019771
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 189aa    MW: 21351.3 Da    PI: 8.9675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019771genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-054163123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C +C++ Fs++  L  H++ H
  DCAR_019771 41 FSCRYCSRKFSTSQALGGHQNAH 63
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.5E-43665IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.23E-53866No hitNo description
PROSITE profilePS5015710.5754168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNNDLFNQPK QIPDSSLAPS ESSNRDKLDL STTTSSSSRS FSCRYCSRKF STSQALGGHQ  60
NAHKQVRNDE KRGHHSGYHD IKNYNVLPSL EHLNYYHPYS TYQPHHSPLY GHNVPSWPGV  120
TPYEYKPRMN DSQHSTSLFD RESGLRDFLG GGSSLQPKHN VDSGKRKFTR VGRGQEEDAS  180
ELDLNLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251226.11e-138PREDICTED: zinc finger protein 2-like
TrEMBLA0A164ZWM71e-136A0A164ZWM7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138