PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 406aa    MW: 44059.8 Da    PI: 6.754
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018870genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-184393256
          AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                 ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g+
  DCAR_018870 43 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 93
                 689******.7*********....4456*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.7E-2943101IPR001471AP2/ERF domain
PROSITE profilePS5103220.50843100IPR001471AP2/ERF domain
PfamPF008473.2E-124392IPR001471AP2/ERF domain
SMARTSM003801.2E-3443106IPR001471AP2/ERF domain
CDDcd000181.26E-1743101No hitNo description
PRINTSPR003671.4E-74455IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2044101IPR016177DNA-binding domain
PRINTSPR003671.4E-76682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MAHDSASGSG SKAAGGGGMG QPSNGPEGLR GRKKSATSRG HHRFVGVRQR PSGRWVAEIK  60
DSLQKVRLWL GTFDTAEDAA RAYDDAARAL RGANARTNFE HPQSLARNSL PEHAEPFSFE  120
QACGKHEAEE GLLGALKAKL YDGNNLRSLI CPQLNSTTSL PALQQQQQSS HAVAVSQQKN  180
HVAKRDHQSM SAPFVGTPAK ATANIGSSLN QLMLPSGFEQ SHKQIDNSFL PNGPIDFMAI  240
HEQQFGGMKW QNQGTDITSA MVWQQQSNYM PWQAASDLNM HIPQDQNAFF GDSPTLPWQF  300
SGASTQSAMI DQHMSHYTDS NYFNNQLLNG NKMNGKMDMM SEYIPVTYGV ADQVVNEAEL  360
TVCGGVSTIW SPDQQFTTGW ATNGNGGVNV SNNWEQLLYA SSVLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-14411061278Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A164ZAS70.0A0A164ZAS7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118691819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-15related to AP2 11