PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018822
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 416aa    MW: 46090.9 Da    PI: 8.5348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018822genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-056385123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  DCAR_018822 63 FMCEICNKGFQRDQNLQLHRRGH 85
                 89*******************88 PP

2zf-C2H211.60.00084139161123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  DCAR_018822 139 WKCDKCSKKYAVQSDWKAHSKIC 161
                  58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.05E-76285No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.996385IPR007087Zinc finger, C2H2
SMARTSM003550.0316385IPR015880Zinc finger, C2H2-like
PfamPF121715.1E-56385IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355230104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.05E-7134159No hitNo description
SMARTSM00355150139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MMSPDGLSSS VEFVREPKPN SNPNGPTSKP SGKRKRNLAG TPEDPDAEVI ALSPKSLTAT  60
NRFMCEICNK GFQRDQNLQL HRRGHNLPWK LKQRANKELK KKVYLCPEES CVHHDPSRAL  120
GDLTGIKKHF FRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCQC GTLFCRKDSF  180
ITHRAFCDAL TDESSKFNTP APPPTLNFSN ELINSSLQLN APQTPGDMTP LFPAMLGQDD  240
LATFDQLNGS TALSEIIQSS NTKARPLKAE ELESSNIKSL TNSMYYNKET SKSHLSATAL  300
LQKATTMGST RSHSAGMFAN GLVFMNSNTL DELLDSDNQM MDITESNHNI ESDLHGKLLS  360
CDKGNMTRDF LGVGGSNNNG SYNKYSRVLL QQEVGKLGSD MDTRQYSVTG TNGEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33135199367Zinc finger protein JACKDAW
5b3h_F4e-33135199367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249251.10.0PREDICTED: protein indeterminate-domain 9-like
SwissprotQ9SCQ61e-110IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A162A5860.0A0A162A586_DAUCS; Uncharacterized protein
STRINGXP_009612448.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.16e-97indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]