PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 276aa    MW: 30644 Da    PI: 7.1334
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018762genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004131153123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C++sF++   L  H  +H
  DCAR_018762 131 YECKTCNRSFTSFQALGGHRASH 153
                  99**********99999998887 PP

2zf-C2H212.70.00038197219123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ Cg  Fs+   L  H+r+H
  DCAR_018762 197 HECSTCGSEFSSGQALGGHMRRH 219
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.6E-12130155IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-8131153No hitNo description
PROSITE profilePS5015710.99131158IPR007087Zinc finger, C2H2
SMARTSM003550.071131153IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-8192219No hitNo description
PfamPF139128.6E-12196220IPR007087Zinc finger, C2H2
SMARTSM003550.068197219IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868197219IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MTLLGSDIEE ASSQELTMEA RRRIIFRGKR TKRSRPRPST VVTSSSSTTG GERGLEGDAY  60
SLIPSPQSYG NSASTQEDED MANCLMLLAQ SGGSFNQKQH HDDEIYTKKL SSRKFNEMVS  120
STSGKEEFYA YECKTCNRSF TSFQALGGHR ASHKKPKNLI DEKGALISTI LNDKEDQEHG  180
LFNKTSAIIS QQKAKVHECS TCGSEFSSGQ ALGGHMRRHR IPTTNTISSI IDHDDQKPRN  240
HVLQLDLNLP APEDDHYDSK FQFVFSTAAL VDCHY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249157.10.0PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X43e-52ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A162A5480.0A0A162A548_DAUCS; Uncharacterized protein
STRINGcassava4.1_031269m8e-69(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-53C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]