PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018222
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 166aa    MW: 18666.4 Da    PI: 6.8941
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018222genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.81.4e-276931100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk            ++p e+r da+sslv+eA+ar+rdPvyG+vg i+ lq q++ql+ +la+++
  DCAR_018222   6 PCASCKLLRRRCAKDCIFAPYFPPHDPHKFAIVHK------------EIPVEQRGDAVSSLVFEANARLRDPVYGCVGAISYLQTQVSQLQMQLAVAE 91 
                  7********************************97............89**********************************************998 PP

       DUF260  99 ee 100
                  +e
  DCAR_018222  92 AE 93 
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.246594IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-27691IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVGASPCASC KLLRRRCAKD CIFAPYFPPH DPHKFAIVHK EIPVEQRGDA VSSLVFEANA  60
RLRDPVYGCV GAISYLQTQV SQLQMQLAVA EAEILCLQMQ QQQQQQSQQP NIPITAQQMM  120
MIPDDKSLHL STNNFDYSLQ QQYLNFGPTS NIVMQDPPKR ESLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-354959112LOB family transfactor Ramosa2.1
5ly0_B7e-354959112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251845.11e-108PREDICTED: LOB domain-containing protein 12
SwissprotQ8LBW37e-61LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A162A4281e-119A0A162A428_DAUCS; Uncharacterized protein
STRINGPOPTR_0001s28840.15e-71(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-59LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]