PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018157
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 181aa    MW: 19802.4 Da    PI: 4.8004
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018157genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37.1e-17857155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+G+r  +++g+WvAeIr+p++   ++r++lg++ t+e+Aa+a++aa + l+g
  DCAR_018157  8 PVYRGIR--SRSGKWVAEIREPRK---TTRIWLGTYPTPEMAAAAYDAASLVLKG 57
                 68****6..678*********843...5*********************887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-10856IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-18966IPR016177DNA-binding domain
PROSITE profilePS5103219.796965IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-26966IPR001471AP2/ERF domain
SMARTSM003801.6E-27971IPR001471AP2/ERF domain
CDDcd000186.54E-181067No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSLWPRLPVY RGIRSRSGKW VAEIREPRKT TRIWLGTYPT PEMAAAAYDA ASLVLKGPET  60
ALNFPHHKYN NNLLLVPVQP TTAAGVREAA ANAAASLAVA SESTVALPAS QLARHGDCDV  120
NDNTSDNLVE MREEYQDDEE LFYMPNLLMA MAEGMLISPP RITISPPPSD NSDCLWSYSL  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1310701576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251753.11e-131PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ909e-35ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A164YSD81e-129A0A164YSD8_DAUCS; Uncharacterized protein
STRINGVIT_16s0100g00400.t017e-43(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-26ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]