PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018156
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 295aa    MW: 32760.9 Da    PI: 4.7462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018156genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.65e-163989155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr +k   +Wv+e+r+p++   ++r++lg+f tae+Aa+a++ a ++l+g
  DCAR_018156 39 PVYRGVRSRK-LRKWVSEVREPKK---KTRIWLGTFPTAEMAARAHDVAVLALRG 89
                 68*****888.8*********854...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-103989IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-304099IPR001471AP2/ERF domain
PROSITE profilePS5103221.4434097IPR001471AP2/ERF domain
SMARTSM003802.5E-2840103IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-194099IPR016177DNA-binding domain
PRINTSPR003671.1E-74152IPR001471AP2/ERF domain
CDDcd000181.56E-294199No hitNo description
PRINTSPR003671.1E-76379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNTMLSNYIE GTSDSPVMLA SSNPKKRGGR KKFRETRHPV YRGVRSRKLR KWVSEVREPK  60
KKTRIWLGTF PTAEMAARAH DVAVLALRGR SACLNFADSA WRLRIPTSTN ANEIQKAAAE  120
AAEAFRSTCQ DGEVVIEKEQ VALQDYLDEE VAEFGMPGQL IAEMAQGMML PPPDQYYCDG  180
DVEFCAGINK TPGKXNFADS AWRLRIPTST NANEIQKAAA EAAEAFRSTC QDGEVVIEKE  240
QVALQDYLDE EVAEFGMPGQ LIAEMAQGMM LPPPDQYYCD GDVEFCAGMS LWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1338961271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251459.11e-131PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotQ9FJ938e-62DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A164YSB60.0A0A164YSB6_DAUCS; Uncharacterized protein
STRINGXP_008234474.18e-70(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.13e-62C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]