PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017679
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family E2F/DP
Protein Properties Length: 315aa    MW: 34951.1 Da    PI: 7.2543
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017679genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.34.6e-2776158271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  DCAR_017679  76 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnhslsspdqqkyDGKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 158
                  689********...*****999*******************************99**********************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.4E-1111313IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.6E-4572164IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-3375158IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.0E-2577158IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.81E-2178159IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.21E-30163257IPR014889Transcription factor DP, C-terminal
SMARTSM011382.4E-50165311IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.14E-31165267No hitNo description
PfamPF087813.1E-28166272IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRAPSAQSVS SSSGTSQAVA TPHAQNSFLN LNHLHIQQPP QFDNDVDNDV DDAASQAPVG  60
HKKKKRGQGA IDGDKSGRGL RQFSMKVCEK VESKGRTTYN EVADELVAEF SDPNHSLSSP  120
DQQKYDGKNI RRRVYDALNV LMAMDIISKD KKEIQWRGLP QTSLSDIEKL KSERLGLKCK  180
VDKKAAYLQE LEDQRNEKLY SSGDPPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF  240
NSTPFELYDD NYILKAMKFC GKPEGNDSAD RGESSSIFQP QITDPSKSSI QLRRTPTSPP  300
LPGILKARVK REQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3973163593PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250271.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-123DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A161XS150.0A0A161XS15_DAUCS; Uncharacterized protein
STRINGGorai.006G163100.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-121Transcription factor DP