PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016859
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family G2-like
Protein Properties Length: 376aa    MW: 42059.2 Da    PI: 7.3193
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016859genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.3e-3346100155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl
  DCAR_016859  46 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 100
                  79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3843103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-3144101IPR009057Homeodomain-like
SuperFamilySSF466897.7E-1745101IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-2446101IPR006447Myb domain, plants
PfamPF002492.1E-104899IPR001005SANT/Myb domain
PfamPF143795.7E-24148193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MYHHQHYHAN NMQPTSRMSI TPERHLFLQG GHAAGDSGLV LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKSVLKL MGIQGLTLYH LKSHLQKYRL SKNLHGQANN GANKIVATVA  120
PAGERMSDSP GPHISTSDQG PQTNKNLHIG DAIQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQTVLEK AQDTLGKQNL GTVGLEAAKV QLSELVSNVS TKSLDSAFSG MIEVPTFYPQ  240
QIQAKQPTDC SIQSCLTSYE VSQQGQEIQN RWSKDIKENR NFMSPIVQNT DKAYEMQLHA  300
SDLSMSVGVK EKMEERDIDA NLFYERTNPV KQEDRKSRQG FQISNSAPQL DLNIHDDSDA  360
ASNCKHFDLN GFSWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-2245102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251270.10.0PREDICTED: uncharacterized protein LOC108221925 isoform X1
SwissprotQ9SQQ91e-121PHL9_ARATH; Myb-related protein 2
TrEMBLA0A164XUZ00.0A0A164XUZ0_DAUCS; Uncharacterized protein
STRINGevm.model.supercontig_785.21e-163(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29462451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-123G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]