PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016468
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 207aa    MW: 22458.5 Da    PI: 4.5725
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016468genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.77.2e-42141131100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+l+rkC +dC++apyfpae+ +kf  vhk+FGasnv kll+++ +++reda+s+l yeAear+rdPvyG+vg i+ lq q+e+l++el++++
  DCAR_016468  14 PCAACKFLKRKCLPDCIFAPYFPAEELQKFISVHKIFGASNVAKLLNEVLPHQREDAASTLSYEAEARLRDPVYGCVGAISILQLQVERLQKELDEAN 111
                  7*********************************************************************************************9998 PP

       DUF260  99 ee 100
                  +e
  DCAR_016468 112 AE 113
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.18213114IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-4114111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAASFSVPRY DYTPCAACKF LKRKCLPDCI FAPYFPAEEL QKFISVHKIF GASNVAKLLN  60
EVLPHQREDA ASTLSYEAEA RLRDPVYGCV GAISILQLQV ERLQKELDEA NAELVSYHCC  120
YHPNMSGTIA TLPAPSAVPI NPVCDYAQIP PQIRPVDLIN TGEAEVCSYY QTPSSVTFPP  180
NDDTNVPDQG GAAGQGLLFN DSASLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-561413711131LOB family transfactor Ramosa2.1
5ly0_B4e-561413711131LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1483971e-121FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251651.11e-151PREDICTED: LOB domain-containing protein 25-like
RefseqXP_017251652.11e-151PREDICTED: LOB domain-containing protein 25-like
SwissprotQ9FML46e-56LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A164XIH71e-150A0A164XIH7_DAUCS; Uncharacterized protein
STRINGXP_006476856.12e-62(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-58LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]