PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016464
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 185aa    MW: 20577.9 Da    PI: 7.8596
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016464genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.41.3e-39411401100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+l++kC +dC+lapyfp e+ ++f  vhk+FGa++v+kll+++ +++r++++s+lvyeA+ar+rdPvyG+vg i+ lq q+e+l++el++++
  DCAR_016464  41 PCAACKFLKKKCRPDCILAPYFPPEELQNFISVHKIFGATRVSKLLNEVLPHQRDETLSCLVYEAQARLRDPVYGSVGAISMLQLQVERLQKELDAAN 138
                  7*********************************************************************************************9998 PP

       DUF260  99 ee 100
                  +e
  DCAR_016464 139 AE 140
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.81340141IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-3841138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MESEFLRLSS NFNLTVIDFD GSIVVRTNAA SFNAVRYNYS PCAACKFLKK KCRPDCILAP  60
YFPPEELQNF ISVHKIFGAT RVSKLLNEVL PHQRDETLSC LVYEAQARLR DPVYGSVGAI  120
SMLQLQVERL QKELDAANAE LVNYACGYNH CCCHLDMGGS TAALPAPSAC LKIQCVIMLR  180
FHHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-534016910131LOB family transfactor Ramosa2.1
5ly0_B2e-534016910131LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1483972e-61FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250579.11e-135PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FML45e-51LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A161YJ031e-134A0A161YJ03_DAUCS; Uncharacterized protein
STRINGVIT_17s0000g09010.t013e-53(Vitis vinifera)
STRINGEOY208514e-53(Theobroma cacao)
STRINGPOPTR_0001s35280.12e-53(Populus trichocarpa)
STRINGPOPTR_0012s08540.14e-53(Populus trichocarpa)
STRINGcassava4.1_017634m2e-53(Manihot esculenta)
STRINGXP_002521459.13e-53(Ricinus communis)
STRINGXP_009779904.13e-53(Nicotiana sylvestris)
STRINGXP_009613707.13e-53(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000466445e-53(Solanum tuberosum)
STRINGXP_010108819.12e-53(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-53LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]