PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016463
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 200aa    MW: 21716.7 Da    PI: 6.3383
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016463genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.71.5e-41131121100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+l+rkC +dC++apyfp e+ +kf  vhk+FGasnv+kll+++ +++re+++ssl yeAear+rdPvyG+vg+i+ lq q+e+l++el++++
  DCAR_016463  13 PCAACKFLKRKCLPDCIFAPYFPPEEVQKFISVHKIFGASNVSKLLNEVLPHQREETVSSLSYEAEARLRDPVYGCVGTISILQLQVERLQKELDEAN 110
                  7*********************************************************************************************9998 PP

       DUF260  99 ee 100
                  +e
  DCAR_016463 111 AE 112
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.88912113IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4013110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAASFKVIKY NSPCAACKFL KRKCLPDCIF APYFPPEEVQ KFISVHKIFG ASNVSKLLNE  60
VLPHQREETV SSLSYEAEAR LRDPVYGCVG TISILQLQVE RLQKELDEAN AELVSYARGH  120
HPDICGSGTP GGLPATGAVP AHPMCNYAQI PRQIIRPVDL INTGEAGACN YYQTPSSFSF  180
PWNIETDVQD QGGGTGQGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-571213810131LOB family transfactor Ramosa2.1
5ly0_B1e-571213810131LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1483973e-97FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251633.11e-148PREDICTED: LOB domain-containing protein 25-like
SwissprotQ9FML44e-59LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A164XIF21e-147A0A164XIF2_DAUCS; Uncharacterized protein
STRINGEOY208519e-66(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-61LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]