PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016461
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 198aa    MW: 21441.3 Da    PI: 6.9688
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016461genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.18e-40141131100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+l+rkC +dC++ap+fp e+ ++f  vhk+FGasnv+kll+++ +++reda+s+l+yeA+ar++dPvyG+v+ i+ lq q+e l++el++++
  DCAR_016461  14 PCAACKFLKRKCLPDCIFAPHFPPEELQNFISVHKIFGASNVSKLLNEVLPHQREDAASTLAYEANARLKDPVYGCVRAISILQLQVEGLQKELDEAN 111
                  7*********************************************************************************************9998 PP

       DUF260  99 ee 100
                  +e
  DCAR_016461 112 AE 113
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.99213114IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3914111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAASFNVVRY NSSPCAACKF LKRKCLPDCI FAPHFPPEEL QNFISVHKIF GASNVSKLLN  60
EVLPHQREDA ASTLAYEANA RLKDPVYGCV RAISILQLQV EGLQKELDEA NAELVNYARG  120
YNHCYHPDIS GTTAAQPAPS AVPVNPMCCY AQIPPQTRPV DLINTGEAGV CNYYRIPSSV  180
TFPRNDTNQG GAAGQGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-54121209117LOB family transfactor Ramosa2.1
5ly0_B8e-54121209117LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1483971e-84FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250577.11e-145PREDICTED: LOB domain-containing protein 25-like
SwissprotQ9FML43e-53LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A164XIB41e-144A0A164XIB4_DAUCS; Uncharacterized protein
STRINGPOPTR_0015s09370.12e-57(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-55LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]