PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015926
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 302aa    MW: 33390.1 Da    PI: 7.7253
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015926genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS155.45.2e-481292998180
         GRAS   8 cAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                  c  + +++d  l+ ++L  l+  ++  gd+mqR++++fteAL+arl+   +++++++  +p +  + +s+e l++++++++++P++k +h+taNqaI 
  DCAR_015926 129 CRSHCKKEDYMLVGRYLHYLNRVVTTLGDSMQRVTSCFTEALNARLNAtlTTKSTSSNSNPFTPFPPDSIEILKIYQILYQACPYIKCAHFTANQAIF 226
                  66788999999************************************954455566666666666778****************************** PP

         GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                  ea+e+e+rvH+i + i qG QWpa++qaL++ p+gpp l+iTgvg     s+e++ etg+ L+++A++l+v +++++
  DCAR_015926 227 EAFESEQRVHVIGLHILQGYQWPAFMQALTAHPGGPPFLQITGVGT----SHEAVMETGRCLSELAHSLRVALRISP 299
                  **********************************************....9*********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.85396301IPR005202Transcription factor GRAS
PfamPF035141.8E-45129299IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVRQKMMNNP LSGSMESLKS QSCCSKLLSN SSNESLLLEA SKKNPLSLDS EKKSLTPSIS  60
SLNFDVLKFD VLDGEMKVQS PDNSALWESF FTDQLDGGDF MISSPVRNLP SPQGTRKWAS  120
TGASTFSLCR SHCKKEDYML VGRYLHYLNR VVTTLGDSMQ RVTSCFTEAL NARLNATLTT  180
KSTSSNSNPF TPFPPDSIEI LKIYQILYQA CPYIKCAHFT ANQAIFEAFE SEQRVHVIGL  240
HILQGYQWPA FMQALTAHPG GPPFLQITGV GTSHEAVMET GRCLSELAHS LRVALRISPC  300
W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2912929925193Protein SCARECROW
5b3h_D1e-2912929925193Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245655.13e-97PREDICTED: DELLA protein RGL1-like
SwissprotG7L1661e-74RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A162A6400.0A0A162A640_DAUCS; Uncharacterized protein
STRINGVIT_14s0068g01610.t012e-84(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-30GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]