PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015846
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 187aa    MW: 21144.9 Da    PI: 9.7835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015846genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-1982132255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIr p +  k +r++lg++ t+e+Aa a+++a+ kl+g
  DCAR_015846  82 RYRGVRRRP-WGKFAAEIRNPAK--KGTRIWLGTYNTPEDAALAYDKAAFKLRG 132
                  8********.**********844..34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.22E-3281140No hitNo description
SuperFamilySSF541716.54E-2382140IPR016177DNA-binding domain
PROSITE profilePS5103224.28982140IPR001471AP2/ERF domain
PfamPF008471.0E-1382132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3182140IPR001471AP2/ERF domain
SMARTSM003801.3E-3482148IPR001471AP2/ERF domain
PRINTSPR003672.8E-108394IPR001471AP2/ERF domain
PRINTSPR003672.8E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MNFISIPDSD LAVLDSIRQH LLEDVYDFNS FTESSSCNFF INEMPCCNVD KITDTVKFPK  60
QERVKMQEVE RPHGSYSQDW KRYRGVRRRP WGKFAAEIRN PAKKGTRIWL GTYNTPEDAA  120
LAYDKAAFKL RGSRAKVNFP GMIGSYISEP IRDTIKGQPT SSASSSSSAI SDNSESSKRR  180
KVLNLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2981140160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-2981145468ATERF1
3gcc_A9e-2981145468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246657.11e-138PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ404797e-35ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A162A6B11e-136A0A162A6B1_DAUCS; Uncharacterized protein
STRINGXP_009593489.19e-44(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-35ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]