PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 212aa    MW: 23721.7 Da    PI: 9.0986
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015840genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-1894144255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+G+r+++ +g+++AeIr p +  k kr++lg++ t+e+Aa a+++a+ k++g
  DCAR_015840  94 RYRGIRRRP-WGKFAAEIRSPAK--KGKRVWLGTYETPEDAALAYDRAAFKIHG 144
                  59*******.**********944..34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-3694158IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2394153IPR016177DNA-binding domain
PfamPF008476.9E-1394144IPR001471AP2/ERF domain
PROSITE profilePS5103224.17194152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3094153IPR001471AP2/ERF domain
PRINTSPR003674.3E-1095106IPR001471AP2/ERF domain
CDDcd000184.59E-25102154No hitNo description
PRINTSPR003674.3E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNREMISTND LPCLLQSIEH HLFDDSELSD IFPTMNLWDV PDTSLTTLFF MDNTSDQTLP  60
MDCYQPDHVD AREETKEKEK EVSARAHPDH IRFRYRGIRR RPWGKFAAEI RSPAKKGKRV  120
WLGTYETPED AALAYDRAAF KIHGSAAKLN FPHLIGSNLP DPVKVAPRQR TSSVPSLTSS  180
SSSLSLLSSS SSNNGSFKKR EKNAAKAIKS A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2795157668ATERF1
3gcc_A1e-2795157668ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246225.11e-157PREDICTED: ethylene-responsive transcription factor ERF098-like
TrEMBLA0A165A2D41e-155A0A165A2D4_DAUCS; Uncharacterized protein
STRINGSolyc01g090310.2.13e-47(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-34ethylene-responsive element binding factor 13