PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014631
Common NameDcERF1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 295aa    MW: 32466.2 Da    PI: 7.2171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014631genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.3e-20134184255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta +Aaka+++a+ +l+g
  DCAR_014631 134 HYRGVRQRP-WGKFAAEIRDP---NrKGSRVWLGTFDTAIDAAKAYDRAAFRLRG 184
                  7********.**********9...6566*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.8E-33133193IPR001471AP2/ERF domain
SMARTSM003804.6E-38134198IPR001471AP2/ERF domain
PROSITE profilePS5103224.078134192IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22134194IPR016177DNA-binding domain
PfamPF008471.0E-13134184IPR001471AP2/ERF domain
CDDcd000182.05E-30134193No hitNo description
PRINTSPR003671.1E-13135146IPR001471AP2/ERF domain
PRINTSPR003671.1E-13174194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGSSPDHIAD EGLALDVIRQ HLLLDDFSFM ENYVFPSSSI DQSTTTSSDN TSLVSDLTFN  60
NNVAVDSYVA GSHDATLNQF SFQHHSAMKR TNSSSFSERK PALNIAVPPA SKVGFQPAAK  120
LSDRRVADSG EKRHYRGVRQ RPWGKFAAEI RDPNRKGSRV WLGTFDTAID AAKAYDRAAF  180
RLRGSKAILN FPHEIAQSPE TSPPVSNIGR KRVKENKAEQ EREIKREKVS EDSNCEVVAA  240
GACPLTPSMW TEVWEGGEEK GGIFEIPPLS PLSPYLNFTQ LNAGDVKKQQ VAQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-30133195466ATERF1
3gcc_A3e-30133195466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3545810.0AB354581.1 Daucus carota DcERF1 mRNA for transcription factor DcERF1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244129.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ404781e-70ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A165XBI30.0A0A165XBI3_DAUCS; Uncharacterized protein
STRINGXP_009594472.14e-69(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.15e-38ERF family protein