PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014105
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 509aa    MW: 56637.6 Da    PI: 4.9797
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014105genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.14.7e-981235021374
         GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalklfsevsPilk 92 
                  lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+Rlaayft+AL+  l +++s+  + l   p  + +e++ +++laa++l++++sP++k
  DCAR_014105 123 LVHLLMAAAEAMTGVNKSrdLARVILIRLKELVSPTQgTNMERLAAYFTQALQGLLEGTGSKNNNVLlngPYHNRDEHQATDTLAAFQLLQDMSPYVK 220
                  68***********96665559***********888665********************99888888743344445555599***************** PP

         GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                  f+h+taNqaIleav +++r+Hi+D+di++G+QW++++q+L sR++gpp  +lRiT++++   g  s ++++etg+rL+ fA+++g pf+f+    ++ 
  DCAR_014105 221 FGHFTANQAILEAVTNDKRIHIVDYDIMEGIQWASFMQSLVSRKDGPPgpHLRITALSRGGGGkrSITSVQETGRRLTAFAASIGQPFSFHQSKLDAD 318
                  ********************************************887767*********66558899*************************888899 PP

         GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklprese 280
                  e++++++L++ +gEal++n++l+l ++  +s ++     ++L+  k+l P++v++ve+e      ++++ F+ rf+e+l+ ysal+dslea++p + +
  DCAR_014105 319 ESFKPSSLKLVRGEALIINCMLHLPHFSYRSPDSVV---SFLSGAKTLDPRLVTLVEEEeeaePTTDEGGFVSRFMESLHRYSALYDSLEAGFPMQGR 413
                  99*************************977776666...9****************99944222336779**************************** PP

         GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                  +r+ vEr++lg++i   +    ++     ++  + ++ l  +GF+ +++s  + +qaklll  ++ dgyrvee  s+ lvlgWk+r+L+s+S W+
  DCAR_014105 414 ARALVERVFLGPRIAGSLNRIYRD-----TEICSLSNYLCGMGFQRANISFANHCQAKLLLGLFN-DGYRVEELaSNKLVLGWKSRRLLSASIWT 502
                  **************9988776666.....6788899*****************************.******876999****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.69697482IPR005202Transcription factor GRAS
PfamPF035141.6E-95123502IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MAMVIDDDFH EFYFPDYCNT ATTTTTTTTT TSASEDELCN WNDWSPLMDW EALSNGHDQD  60
FNGLFESIMD DDSASLSQLQ SSPELQQHPS PQPHEHSSPE LMMISHDPEE ITNNSEDTKG  120
LRLVHLLMAA AEAMTGVNKS RDLARVILIR LKELVSPTQG TNMERLAAYF TQALQGLLEG  180
TGSKNNNVLL NGPYHNRDEH QATDTLAAFQ LLQDMSPYVK FGHFTANQAI LEAVTNDKRI  240
HIVDYDIMEG IQWASFMQSL VSRKDGPPGP HLRITALSRG GGGKRSITSV QETGRRLTAF  300
AASIGQPFSF HQSKLDADES FKPSSLKLVR GEALIINCML HLPHFSYRSP DSVVSFLSGA  360
KTLDPRLVTL VEEEEEAEPT TDEGGFVSRF MESLHRYSAL YDSLEAGFPM QGRARALVER  420
VFLGPRIAGS LNRIYRDTEI CSLSNYLCGM GFQRANISFA NHCQAKLLLG LFNDGYRVEE  480
LASNKLVLGW KSRRLLSASI WTSPEQDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-501095024378Protein SCARECROW
5b3h_D1e-501095024378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246472.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A165XU630.0A0A165XU63_DAUCS; Uncharacterized protein
STRINGPOPTR_0005s15900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-157GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]