PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013864
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 363aa    MW: 38873.9 Da    PI: 8.7189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013864genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05119141223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   CpdCg++F+  ++L+ H+ + H
  DCAR_013864 119 ACPDCGEVFPKIESLELHQAVrH 141
                  6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280118141IPR007087Zinc finger, C2H2
PROSITE profilePS501578.621118146IPR007087Zinc finger, C2H2
SuperFamilySSF563998.34E-24143359No hitNo description
Gene3DG3DSA:3.90.228.104.7E-10145359IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGPNQELAHL QTTGSSICTF RDVAHGNTSR VVHRADNSPE SSSVGQETGL IRRKTVNGSS  60
STRSNMSSAN SVRSNGGGSC RSSSRGMQFR KLSGCYECHM AHMIVDPSRY PTPRTTVCAC  120
PDCGEVFPKI ESLELHQAVR HAVSELGPED SGRNIVEIIF KSSWLKKDSP ICTIERILKV  180
HNTKRTIQKF EDCRDAVKFR ATTTAKRDPR CAADGNELLR FHCTSLTCTL GAHGSSSLCG  240
SVPGCGVCTV IRHGFQGRKL GADNKGVRTT ASSGRAHDCL NSTDTRRAML VCRVIAGRVK  300
RSEDDVAMEE GNAAAAAALN PSGSAYDSVA GLGGVFSNLE ELHVANPRAI LPCFVVIYKT  360
SI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1496061e-39BT149606.1 Medicago truncatula clone JCVI-FLMt-20P4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244124.10.0PREDICTED: uncharacterized protein LOC108215990
TrEMBLA0A165Y2M10.0A0A165Y2M1_DAUCS; Uncharacterized protein
STRINGXP_006473648.11e-177(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-142C2H2-like zinc finger protein