PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012775
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 333aa    MW: 37227.7 Da    PI: 4.5469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012775genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013230253123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ C+k+F+    L+ Hi+  H
  DCAR_012775 230 FPCQLCNKTFKLEKGLECHIKAkH 253
                  89******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.681230258IPR007087Zinc finger, C2H2
SuperFamilySSF576674.11E-5230255No hitNo description
PROSITE patternPS000280232253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MKSKFWGVQV KGKKSEFVCP GNGELIRICQ IALGDENFES VEHVVVYLIV DGKKVALARL  60
SGELPQLSVD IVIETNFRLL HNWKEGRVDL CVDEAADGEG EPPASANSAP AASEPPSSAK  120
SDDSDDDHVE DFYYDEPLEK LDDEDIDKDL VDDSFGVKTP EKFDDDYLDE DQVDNFSEDE  180
TQTPEKVEFN IEVPQRTDGK KRSALTESPC PAKKLKKDTA AEIPESIAEF PCQLCNKTFK  240
LEKGLECHIK AKHEEASAGT TTSYRSKKFL KNSVELQLAC EFCNKLVHPH PYMLSFVLSF  300
LYPRLAQVFF RIFKSEAGLE DHSKAKHGER NG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246121.10.0PREDICTED: histone deacetylase HDT3-like isoform X1
TrEMBLA0A165ZC770.0A0A165ZC77_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-16histone deacetylase 2C