PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 269aa    MW: 29793.9 Da    PI: 6.7943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012730genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-20117166255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ta+eAa a++ a+ kl+g
  DCAR_012730 117 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAQEAALAYDMAAYKLRG 166
                  59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.88E-32116173No hitNo description
Gene3DG3DSA:3.30.730.101.2E-31117175IPR001471AP2/ERF domain
PROSITE profilePS5103222.906117174IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22117175IPR016177DNA-binding domain
SMARTSM003804.1E-36117180IPR001471AP2/ERF domain
PRINTSPR003675.5E-11118129IPR001471AP2/ERF domain
PfamPF008476.7E-14118166IPR001471AP2/ERF domain
PRINTSPR003675.5E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MPVTAAAAAA PYYYYYDTYN SQSLSFSPPA AAAAATNLYP SSSSSSTNIL GSGDEFGSHA  60
SCIGLNQLSP SQIHQIQDQI NQQYQQQQLQ WPPQRQRTLN FHDPNPTPVA PPKPGKLYRG  120
VRQRHWGKWV AEIRLPKNRT RLWLGTFDTA QEAALAYDMA AYKLRGDSAR LNFSHLSGNF  180
GDYKPLHAAV EAKLQAICQT LADGNNNKKQ QPSKTKKLDV KLEGSSDTNS DGPEFGQDDE  240
TAWELGSAQN FMLQKYPSYE IDWASIEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19115173362ATERF1
3gcc_A2e-19115173362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243869.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotQ8H1E41e-60RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A165ZDL10.0A0A165ZDL1_DAUCS; Uncharacterized protein
STRINGPOPTR_0005s16690.11e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-57related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]