PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012555
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 291aa    MW: 33181.3 Da    PI: 6.4009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012555genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.1e-51101381129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrF P+deelv++yL+kk+++++++   ++ ++d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v++  ++
  DCAR_012555  10 LPPGFRFYPSDEELVCHYLHKKIAHEDVSK-GTLVDIDLHTCEPWQLPEVAKLNSTEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRAVVDPgTN 106
                  79*************************988.88***************88888999**************************************9666 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                   +vg++ktLvfyk+rap+g kt W+mhe+rle
  DCAR_012555 107 CVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 138
                  67***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-618156IPR003441NAC domain
PROSITE profilePS5100557.40610156IPR003441NAC domain
PfamPF023651.2E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGLRDIGAAL PPGFRFYPSD EELVCHYLHK KIAHEDVSKG TLVDIDLHTC EPWQLPEVAK  60
LNSTEWYFFS FRDRKYATGY RTNRATTSGY WKATGKDRAV VDPGTNCVVG MRKTLVFYKN  120
RAPNGIKTGW IMHEFRLENP LIPPKEDWVL CRVFYKSKTE SNIELSQQNV YDAEARAGGD  180
TSPNAAQIML PSCNIYHNQT FSSESPAPHD HQNPSNHHTI SPLNPNLLLL SHHQFHTDHL  240
NEMIMINSKC EIIDNYGFLM DTSFEDMHPG DGTSNMEMKF EDNHSSIFLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-48915916168NO APICAL MERISTEM PROTEIN
1ut4_B2e-48915916168NO APICAL MERISTEM PROTEIN
1ut7_A2e-48915916168NO APICAL MERISTEM PROTEIN
1ut7_B2e-48915916168NO APICAL MERISTEM PROTEIN
3swm_A3e-48915919171NAC domain-containing protein 19
3swm_B3e-48915919171NAC domain-containing protein 19
3swm_C3e-48915919171NAC domain-containing protein 19
3swm_D3e-48915919171NAC domain-containing protein 19
3swp_A3e-48915919171NAC domain-containing protein 19
3swp_B3e-48915919171NAC domain-containing protein 19
3swp_C3e-48915919171NAC domain-containing protein 19
3swp_D3e-48915919171NAC domain-containing protein 19
4dul_A2e-48915916168NAC domain-containing protein 19
4dul_B2e-48915916168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239074.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8512e-63NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A169WE420.0A0A169WE42_DAUCS; Uncharacterized protein
STRINGXP_006479521.11e-113(Citrus sinensis)
STRINGXP_006443820.11e-113(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-89NAC domain containing protein 74
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]