PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012553
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 248aa    MW: 28194.9 Da    PI: 7.419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012553genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.16.3e-3178553129
          NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   ++++wyfFs rd+kyatg r+nrat+sgyWkatgkd++v++   ++  vg++ktLvfyk+rap+g+kt W+mhe+rle
  DCAR_012553   7 LNSTDWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPgtNSCIVGMRKTLVFYKNRAPNGVKTGWIMHEFRLE 85 
                  45689*************************************9555666***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.511103IPR003441NAC domain
SuperFamilySSF1019411.01E-384103IPR003441NAC domain
PfamPF023652.8E-151184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MHHAAKLNST DWYFFSFRDR KYATGFRTNR ATTSGYWKAT GKDRTVVDPG TNSCIVGMRK  60
TLVFYKNRAP NGVKTGWIMH EFRLENPLIP PKEDWVLCRV FYKSKTEINS QLSPQNVYHS  120
EAKFAGAHTF PHSPQIMLPA ACNKNNYHLH QITTSQSPAP HHQNPNNLPT VPQLNPNFLH  180
LSHQIHTNHL NEMIMLKSAC DEEDPYGFLL NMEFEAESYM GGGMASSVED MKFEDDCCMP  240
SLIGHCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-27110662168NO APICAL MERISTEM PROTEIN
1ut4_B5e-27110662168NO APICAL MERISTEM PROTEIN
1ut7_A5e-27110662168NO APICAL MERISTEM PROTEIN
1ut7_B5e-27110662168NO APICAL MERISTEM PROTEIN
3swm_A5e-27110665171NAC domain-containing protein 19
3swm_B5e-27110665171NAC domain-containing protein 19
3swm_C5e-27110665171NAC domain-containing protein 19
3swm_D5e-27110665171NAC domain-containing protein 19
3swp_A5e-27110665171NAC domain-containing protein 19
3swp_B5e-27110665171NAC domain-containing protein 19
3swp_C5e-27110665171NAC domain-containing protein 19
3swp_D5e-27110665171NAC domain-containing protein 19
4dul_A5e-27110662168NAC domain-containing protein 19
4dul_B5e-27110662168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241031.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X1
TrEMBLA0A161Y3J90.0A0A161Y3J9_DAUCS; Uncharacterized protein
STRINGXP_009800923.13e-74(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-56NAC domain containing protein 74