PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 227aa    MW: 25224.4 Da    PI: 4.9253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012543genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-1895144355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+++AeIrd + ng   r++lg+f+ ae Aa a+++a+ +++g
  DCAR_012543  95 YRGVRRRP-WGKFAAEIRDSTRNG--IRVWLGTFDDAETAAMAYDQAAFSMRG 144
                  9*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.5194152IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2294154IPR016177DNA-binding domain
SMARTSM003805.1E-3594158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2994153IPR001471AP2/ERF domain
PRINTSPR003679.1E-1395106IPR001471AP2/ERF domain
PfamPF008471.0E-1195144IPR001471AP2/ERF domain
CDDcd000188.81E-2895153No hitNo description
PRINTSPR003679.1E-13134154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDPTFTRFSP MDYSPQSSFG SQPESFVSYG TDFDLSDLPF DFNDSEEMLL FGILSGTPPQ  60
NNNSCVVKEE EVSSSSGSGS GSSLKLEEAK KEKAYRGVRR RPWGKFAAEI RDSTRNGIRV  120
WLGTFDDAET AAMAYDQAAF SMRGSMAILN FPVERVKESL KEMKCGLEEG CSPVVALKKK  180
HSMRRKSVSR KIKKKDNQME NVVVLEDLGA EYLEELLSSS ESVGFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-28951541574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240743.11e-166PREDICTED: ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y93e-76ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A161Y3J01e-165A0A161Y3J0_DAUCS; Uncharacterized protein
STRINGXP_010093429.13e-78(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-58ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]