PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012542
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 179aa    MW: 20034.2 Da    PI: 9.6144
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012542genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-193889256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+G+r+++ +g+++AeIrdp++ng  +r++lg+f t eeAa+a+++a+ +l+g+
  DCAR_012542 38 KYRGIRRRP-WGKYAAEIRDPNKNG--ARVWLGTFSTGEEAARAYDRAAYALRGH 89
                 8********.***********8887..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.4E-258165IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008471.4E-143889IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-233897IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-313897IPR001471AP2/ERF domain
CDDcd000181.74E-193897No hitNo description
PROSITE profilePS5103224.463896IPR001471AP2/ERF domain
SMARTSM003802.5E-3538102IPR001471AP2/ERF domain
PRINTSPR003676.1E-113950IPR001471AP2/ERF domain
PRINTSPR003676.1E-116278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDANHGSTKS YSNEVTSKIN TTRKTGKMAE PYVPKEIKYR GIRRRPWGKY AAEIRDPNKN  60
GARVWLGTFS TGEEAARAYD RAAYALRGHQ ALLNFPNENH YKTSPVQEIS EFSKNLVDEI  120
SNHKAPASSS ANYADAPGSS ISFKREKGAE FIEFEYVEDN LLDELLGTQN PNKRSRSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2938981474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241134.11e-130PREDICTED: ethylene-responsive transcription factor ERF098-like
TrEMBLA0A166CHK11e-129A0A166CHK1_DAUCS; Uncharacterized protein
STRINGXP_006480088.12e-39(Citrus sinensis)
STRINGXP_006443851.12e-39(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-30ERF family protein