PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012273
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 181aa    MW: 20466.2 Da    PI: 7.8261
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012273genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.7e-3961001100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++     r da+sslv+eA+ar rdPvyG+vg i+ lq+q++ql+ +la+++
  DCAR_012273   6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQQ-----RGDAVSSLVFEANARSRDPVYGCVGAISYLQNQVSQLQMQLAVAQ 98 
                  7*********************************************98.....*******************************************99 PP

       DUF260  99 ee 100
                  +e
  DCAR_012273  99 AE 100
                  87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1015101IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-38698IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVGATPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK IFGASNVSKM LQQRGDAVSS  60
LVFEANARSR DPVYGCVGAI SYLQNQVSQL QMQLAVAQAE ILCFQMQQQQ QQQQQDHHHQ  120
QPNNIPITTQ QMMNQDEKSL LLSTSNFDYN LLQQQYLNFS STTSNNIVMQ DPPKRESLWT  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4241029112LOB family transfactor Ramosa2.1
5ly0_B3e-4241029112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240648.11e-115PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW33e-72LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A161Y2X01e-131A0A161Y2X0_DAUCS; Uncharacterized protein
STRINGAquca_030_00227.14e-79(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-69LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]