PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011508
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 320aa    MW: 35565 Da    PI: 6.0454
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011508genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20147196255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+++taeeAa a+++a+ kl+g
  DCAR_011508 147 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEEAALAYDRAAYKLRG 196
                  59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-33146204No hitNo description
SMARTSM003801.1E-36147210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-31147205IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-23147205IPR016177DNA-binding domain
PROSITE profilePS5103223.117147204IPR001471AP2/ERF domain
PRINTSPR003676.2E-11148159IPR001471AP2/ERF domain
PfamPF008479.5E-15148196IPR001471AP2/ERF domain
PRINTSPR003676.2E-11170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAAAMNFYNS SPDLSSEDQL MKALEPFMKS APLPSPPPTN TTAPSTSNSF SPFSSQPCNL  60
DPSLSPAQIF SQDFSTSTQM NFDQTGSLGL NQLTPSQILQ IQSQLHLQQH QNYWASNSSS  120
AQKPLNFLGL KPVAMKQGQT PAKPKKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTYDTA  180
EEAALAYDRA AYKLRGDFAR LNFPTLKLDP HYKSLHSCID AKLEAICKNL TDVPQDKKSK  240
TPLKAAVDSV PAEADIPKVD DTSNQNLIFS GQDLSGGSSP ESELTYLDFA EPRFDELENF  300
KSQEIPSMEI DWEALYSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21146204160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-21146204463ATERF1
3gcc_A3e-21146204463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237897.10.0PREDICTED: ethylene-responsive transcription factor ERF057-like
TrEMBLA0A162AL690.0A0A162AL69_DAUCS; Uncharacterized protein
STRINGPOPTR_0005s07900.16e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-47ERF family protein