PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_011469
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 259aa    MW: 27874.2 Da    PI: 6.8506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_011469genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1896145255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f +ae Aa+a++ a++ ++g
  DCAR_011469  96 KYRGVRRRP-WGKWAAEIRDP-----HkaARVWLGTFTSAEAAARAYDVAALHFRG 145
                  8********.**********7.....337**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-3295154IPR001471AP2/ERF domain
CDDcd000182.91E-2296155No hitNo description
SMARTSM003804.3E-3696159IPR001471AP2/ERF domain
PROSITE profilePS5103225.5896153IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2296154IPR016177DNA-binding domain
PfamPF008476.8E-1296145IPR001471AP2/ERF domain
PRINTSPR003678.2E-1497108IPR001471AP2/ERF domain
PRINTSPR003678.2E-14135155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNASGRQSGA TFGADKNKEE EIMVSALAHV IAGGGRKDGA DYHHLPTHHS EPESQVFSHY  60
ADLSVAGSPS LMHESSQDTS YSQGTSSGEE AQATRKYRGV RRRPWGKWAA EIRDPHKAAR  120
VWLGTFTSAE AAARAYDVAA LHFRGSKAKL NFPENVTRAS SSSHSPTPQW IVSPNPDPNF  180
PISTSRDPIA QGAPMSQYSV HEPVEYSDYY PQFAFSSAGT SASCNYSSSA STSDYTSIVN  240
VSSSHSPAFP SSDQYHQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2195156163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-20961531472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241064.10.0PREDICTED: ethylene-responsive transcription factor ERF113
TrEMBLA0A166BPN30.0A0A166BPN3_DAUCS; Uncharacterized protein
STRINGXP_010096464.14e-38(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-26related to AP2 6