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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_011469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 27874.2 Da PI: 6.8506 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.4e-18 | 96 | 145 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f +ae Aa+a++ a++ ++g DCAR_011469 96 KYRGVRRRP-WGKWAAEIRDP-----HkaARVWLGTFTSAEAAARAYDVAALHFRG 145 8********.**********7.....337**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-32 | 95 | 154 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.91E-22 | 96 | 155 | No hit | No description |
SMART | SM00380 | 4.3E-36 | 96 | 159 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.58 | 96 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-22 | 96 | 154 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.8E-12 | 96 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-14 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-14 | 135 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MNASGRQSGA TFGADKNKEE EIMVSALAHV IAGGGRKDGA DYHHLPTHHS EPESQVFSHY 60 ADLSVAGSPS LMHESSQDTS YSQGTSSGEE AQATRKYRGV RRRPWGKWAA EIRDPHKAAR 120 VWLGTFTSAE AAARAYDVAA LHFRGSKAKL NFPENVTRAS SSSHSPTPQW IVSPNPDPNF 180 PISTSRDPIA QGAPMSQYSV HEPVEYSDYY PQFAFSSAGT SASCNYSSSA STSDYTSIVN 240 VSSSHSPAFP SSDQYHQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-21 | 95 | 156 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-20 | 96 | 153 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017241064.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | A0A166BPN3 | 0.0 | A0A166BPN3_DAUCS; Uncharacterized protein | ||||
STRING | XP_010096464.1 | 4e-38 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 1e-26 | related to AP2 6 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_011469 |