PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010628
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 364aa    MW: 40977.6 Da    PI: 4.6609
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010628genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19121170255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  DCAR_010628 121 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 170
                  89*******.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-29120178IPR001471AP2/ERF domain
SMARTSM003809.9E-38121184IPR001471AP2/ERF domain
PfamPF008479.7E-13121170IPR001471AP2/ERF domain
CDDcd000183.48E-33121177No hitNo description
SuperFamilySSF541711.9E-21121178IPR016177DNA-binding domain
PROSITE profilePS5103223.63121178IPR001471AP2/ERF domain
PRINTSPR003674.1E-10122133IPR001471AP2/ERF domain
PRINTSPR003674.1E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDHHSMLCPI KFTEHRNITK KLTNPLIKKA KKFTEKRIVR ISVTDPDATD SSSDEEDELF  60
GRQRIKRYIN EISIEAGCKN NVVSLPNANA KKKKKDMRVN SKAKPMKPAQ AAPPANGNVR  120
KFRGVRQRPW GKWAAEIRDP ARRVRLWLGT YDTAEEAAMV YDNAAIKLRG PDALTNFVTP  180
ALKEKPEVNI GSVSGYESGE ESNNNLCSPT SVLRFRSQSN EEAEECHSAN EPTSHEPADL  240
MDPIFEPVEP VYESAEPFYH EPVCHEPVHP FVQECEDETF INSMFDFQSP APLSFDDDLT  300
FSDGFSNIPF DDNSIFGNDW LNNGEEMSSQ WVNDIGSPAL FQVDDYFQDI NGDFFATDVL  360
MAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21120177159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238735.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A169WAK60.0A0A169WAK6_DAUCS; Uncharacterized protein
STRINGXP_009596437.11e-108(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-53cytokinin response factor 4