PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009838
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 176aa    MW: 18475 Da    PI: 9.1566
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009838genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.84e-30201455105
          TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg............ 88 
                    +++ ++Tkv+gR+ R+R++ +ca r+F+L++eLG+ +d+ ti+WLl+qa+pai+ +tgt++ +a ++     + s  + + ++g            
  DCAR_009838  20 PAPKKERYTKVEGRGSRIRMPTLCATRVFQLTKELGLATDGATIQWLLEQAEPAIIRATGTGTVPAIATvtA--DGSLRVPETKEGaaedvsktsgla 115
                  67899********************************************************88888666332..333333322222234555555566 PP

          TCP  89 .............kaaksaakskksqksaa 105
                                aa++ +k +++q+s +
  DCAR_009838 116 avgpspvsvpgygMAAENGMKMNQNQASVS 145
                  667666666665433333334444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-232299IPR005333Transcription factor, TCP
PROSITE profilePS5136919.4292377IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSSQKDFKGD SQVSGGPSQP APKKERYTKV EGRGSRIRMP TLCATRVFQL TKELGLATDG  60
ATIQWLLEQA EPAIIRATGT GTVPAIATVT ADGSLRVPET KEGAAEDVSK TSGLAAVGPS  120
PVSVPGYGMA AENGMKMNQN QASVSCEARV SSAAEDEYDE VVLMGKKIRF RKRGL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239441.11e-125PREDICTED: transcription factor PCF2-like
TrEMBLA0A166ADD41e-124A0A166ADD4_DAUCS; Uncharacterized protein
STRINGBo4g024860.12e-31(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.29e-34TCP family protein