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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_009768 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | TCP | ||||||||
Protein Properties | Length: 304aa MW: 34082.5 Da PI: 6.3714 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.7 | 2.5e-35 | 19 | 124 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssasn 84 a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++ ++ ++++ s ++++ DCAR_009768 19 ATGRKDRHSKVYTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLMNKAKNAIDKLEELppwnpmdtttvlnaGQ------NPNELSLQQHQ 110 589**************************************************************7766555444333222......33344444444 PP TCP 85 sssg.........k 89 +s++ DCAR_009768 111 QSQHylfqdqlddG 124 44334455455552 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.8E-32 | 20 | 127 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.135 | 22 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MKSNAGEIVQ VEGGHILRAT GRKDRHSKVY TAKGPRDRRV RLAAHTAIQF YDVQDRLGYD 60 RPSKAVDWLM NKAKNAIDKL EELPPWNPMD TTTVLNAGQN PNELSLQQHQ QSQHYLFQDQ 120 LDDGPINDTM KSFFPTSSGM NYQNYPSGSV QNNPQDLCLS LQSLQDLNRS VHSTPTPAND 180 HPSLYNPGPS EANFQRMVSW DAEMKPAEGY SFYPHTMPQP QMISVNSTPF TQRESLQSSF 240 SPYVRAWNDL PFPVSDHNNT QANDHFSMSS ASSQFGSRKI SSFQVPARIH GEDHEDPSSA 300 SDN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002525139.1 | 2e-88 | PREDICTED: transcription factor TCP4 | ||||
TrEMBL | B9SGM0 | 2e-88 | B9SGM0_RICCO; Transcription factor, putative | ||||
STRING | POPTR_0019s12110.1 | 1e-86 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6607 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 6e-51 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_009768 |