PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009457
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 214aa    MW: 23734.5 Da    PI: 6.369
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009457genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-1869118355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+++AeIrdp+     +r++lg+f +a eAaka++ a+ kl+g
  DCAR_009457  69 YRGVRQRP-WGKFAAEIRDPTRK--GTRVWLGTFESAVEAAKAYDSAAFKLRG 118
                  9*******.**********8542..4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-3268127IPR001471AP2/ERF domain
CDDcd000185.13E-3268128No hitNo description
SMARTSM003802.3E-3868132IPR001471AP2/ERF domain
PfamPF008477.4E-1368118IPR001471AP2/ERF domain
PROSITE profilePS5103224.07868126IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2268128IPR016177DNA-binding domain
PRINTSPR003671.0E-136980IPR001471AP2/ERF domain
PRINTSPR003671.0E-13108128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTSSHDETST LDVIRQHLLD ETLLTHNFSF HSSDKSDQTC FSERKPSLNI SVSQINNKVD  60
FSSAERRNYR GVRQRPWGKF AAEIRDPTRK GTRVWLGTFE SAVEAAKAYD SAAFKLRGSK  120
AILNFPHDVG NLPAPAEDGR KRSADSPEVD VERKVAKTEE EVIEEEVKTV ELSPLTPSNW  180
TGVWEGGKND KGIFEIPLLS PMTPACSKVS NSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2867126160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2864126163ATERF1
3gcc_A2e-2864126163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237606.11e-157PREDICTED: ethylene-responsive transcription factor 5
SwissprotQ404789e-58ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLA0A162AGD71e-156A0A162AGD7_DAUCS; Uncharacterized protein
STRINGXP_009609461.15e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.18e-47ERF family protein