PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009396
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 224aa    MW: 25169.4 Da    PI: 6.9138
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009396genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-1661111155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+G+r++  +g+Wv+e+r+p  n  + r++lg++ tae+Aa+a + a+ +l+g
  DCAR_009396  61 PVYRGIRRRN-SGKWVCEVREPI-N--NSRIWLGTHPTAEMAARANDVAAIALRG 111
                  68*****888.8******99973.3..3*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-1261111IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1962121IPR016177DNA-binding domain
PROSITE profilePS5103221.1462119IPR001471AP2/ERF domain
SMARTSM003807.9E-2662125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-2962121IPR001471AP2/ERF domain
PRINTSPR003674.8E-86374IPR001471AP2/ERF domain
CDDcd000184.41E-3063121No hitNo description
PRINTSPR003674.8E-885101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNNSLLYSDE ASSSQSTEYS SNTESTANCN DITQISHEVL LASRNPKKRS GRKKFKETRH  60
PVYRGIRRRN SGKWVCEVRE PINNSRIWLG THPTAEMAAR ANDVAAIALR GRNACLNFAD  120
SVWRLPIPAS NDVKDIQIAA AKAAEAFRPK KIEKTIESSP IKALVSEEND EVLFMDEELL  180
FGMPQFIKHM AQGMLLPPPQ YLQSDRCYGD DDLEYATDMS LWC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242530.11e-168PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ933e-68DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A166A1V51e-167A0A166A1V5_DAUCS; Uncharacterized protein
STRINGEMJ195115e-81(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-66C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]