PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008908
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 296aa    MW: 33661.8 Da    PI: 5.4935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008908genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-1983132255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+++AeIrdp++   r r +lg+f+taeeAa+ ++ a+++++g
  DCAR_008908  83 KFRGVRRRP-WGKFAAEIRDPVQ---RVRLWLGTFDTAEEAARVYDTAALRIRG 132
                  89*******.**********755...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-2982140IPR001471AP2/ERF domain
PfamPF008473.6E-1183132IPR001471AP2/ERF domain
CDDcd000181.39E-3283139No hitNo description
PROSITE profilePS5103223.55183140IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2183140IPR016177DNA-binding domain
SMARTSM003805.1E-3683146IPR001471AP2/ERF domain
PRINTSPR003674.3E-108495IPR001471AP2/ERF domain
PRINTSPR003674.3E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMHPKKLMKP SSRKPKKFLH KIVRVSVTDP DATDSSSDEE GGSFHKPRVK KYVREIIVEA  60
TGVVSRRKVK ENLKRVAAPA GRKFRGVRRR PWGKFAAEIR DPVQRVRLWL GTFDTAEEAA  120
RVYDTAALRI RGPDALTNFI HPTEKPENKI LDEISNVASP TSVLSLFEME AEEYSKHENN  180
YTSPCLTVDN SDVDHMSECQ CREPFSFPNE PIFPNDDFSS QEYEIPSPFH EACLRYGFSF  240
YQKTGIDDFD IPIQLEEAGI YTDKDDSRIP YDLKLEIGSP LSSDVGDYFE ENLSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2181139362ATERF1
3gcc_A3e-2181139362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241075.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE35e-40CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A165ZKN20.0A0A165ZKN2_DAUCS; Uncharacterized protein
STRINGGorai.008G271200.14e-48(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-42cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]