PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008717
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 233aa    MW: 25633.3 Da    PI: 6.0123
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008717genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19171214249
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                  +ykGVr+++ +grWvAeIr p++   r+r++lg+++taeeAa a++ a
  DCAR_008717 171 QYKGVRQRH-WGRWVAEIRLPKN---RTRVWLGTYDTAEEAAMAYDIA 214
                  6*******9.**********965...5*******************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-25171217IPR001471AP2/ERF domain
SMARTSM003801.5E-22171232IPR001471AP2/ERF domain
CDDcd000184.22E-26171214No hitNo description
SuperFamilySSF541719.81E-18171216IPR016177DNA-binding domain
PROSITE profilePS5103219.282171230IPR001471AP2/ERF domain
PRINTSPR003671.1E-10172183IPR001471AP2/ERF domain
PfamPF008473.7E-13172213IPR001471AP2/ERF domain
PRINTSPR003671.1E-10194210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDIWEGNDNN SCRSNGSRDI FEGGELLEAL EPFIRSSSPS TPFSWSFPCF PLQTCTNVSV  60
LHQEDCSAPN SHLFPQGYSV QTHDQVLHQE DCSAPDSHLF PKRYSGSVQT HDQVGIDQPG  120
SFGLQRISTP ENHQIPAQVD HQYQQQQIQV GSGSGSGSGS GSASAVKPKN QYKGVRQRHW  180
GRWVAEIRLP KNRTRVWLGT YDTAEEAAMA YDIATILTII PTLLTTTGFA QL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1882910.0AB188291.1 Daucus carota C-EF3 mRNA for embryonic element binding Factor 3, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A162AEH41e-173A0A162AEH4_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.15e-24ERF family protein