PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008572
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 421aa    MW: 48796.6 Da    PI: 9.2011
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008572genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-24249346189
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SSSE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgrse 89 
                  f+kvl +sdv++++rl++pk+fa +h         ++ + + + ++d + + W+++++++k+s++yv+t+GW++Fvka +L++gD v+F+  ++g+++
  DCAR_008572 249 FKKVLAKSDVGRLSRLIIPKRFAIQHfpsidvnARIEDCVFHIDFYDARKNLWTFRYCFWKCSRSYVFTGGWNKFVKAYKLQAGDNVLFYknYSGDES 346
                  89****************************9997777899**************************************************55545433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-93774IPR015300DNA-binding pseudobarrel domain
CDDcd100174.15E-1241112No hitNo description
SuperFamilySSF1019361.96E-1241102IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.02343110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-578103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.97879115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-29243345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-26247340IPR015300DNA-binding pseudobarrel domain
CDDcd100174.18E-24247353No hitNo description
SMARTSM010191.5E-17249351IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421249356IPR003340B3 DNA binding domain
PfamPF023625.1E-21249346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MMCYDTSLNS DARLSPPHKR QRLEKDAVIA IHDGEYHARE FLFKKVLAKS DVGRLSRLII  60
PKRFAIQHFP SIDVNARRWN KFVKAYKLQA GDNVLFYKNY NGDEGFFGIE VRYAGTRNVV  120
GSLANNLYNG EEFINDDTVR VKEEHEVSAS QLKEKDVMLF GVRIKRASKD FQGESNDVIK  180
EEEDYLVHKA DYRRVKEEEF EGLKITMMCY DTSLNSDARL SPPHKRQRLE KDAVIAIHDG  240
EYHAREFLFK KVLAKSDVGR LSRLIIPKRF AIQHFPSIDV NARIEDCVFH IDFYDARKNL  300
WTFRYCFWKC SRSYVFTGGW NKFVKAYKLQ AGDNVLFYKN YSGDESFFGI EVRYAGARNV  360
VGSLANNLYN GEELMNDDTA RVKEEHEVSA SQLKEKDVML FGVRIKRASK DFQGKNLVIM  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2124634811111DNA-binding protein RAV1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1492211e-46FJ149221.1 Daucus carota subsp. sativus clone BAC C121C04 genomic sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.15e-24RAV family protein