PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008275
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 241aa    MW: 26583.7 Da    PI: 6.8903
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008275genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000127092123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  DCAR_008275 70 YTCTFCRREFRSAQALGGHMNVH 92
                 9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-66797No hitNo description
Gene3DG3DSA:3.30.160.609.4E-46895IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-57093IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1577097IPR007087Zinc finger, C2H2
SMARTSM003550.00667092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAAQLGLLSL SQLEKLKQAQ ERLHFKGASW MWNSKQQVMV DQESDDSWEV RAFEEDTNNA  60
MGTTWPPRSY TCTFCRREFR SAQALGGHMN VHRRDRARLH QTPPLPTGCT TAVIMNPAHH  120
QELVANGGVC LFYTLPNPNA VLSPSTVNHC VESSKLHSVN LPYASNNFVP PNCPPPLSIN  180
LSRAHSVNSS LGHSSNTEHS ASTINDNCNE DYLITSKKDS GEFQKEIDLE LRLGCGPSPS  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-136592229superman protein
2l1o_A4e-136592229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234252.10.0PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A166F7P11e-180A0A166F7P1_DAUCS; Uncharacterized protein
STRINGEOY240173e-63(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-40C2H2 family protein