PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007468
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 253aa    MW: 28752.1 Da    PI: 8.9145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007468genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-055679123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 ++C++C+ksF++  +L +H  + H
  DCAR_007468 56 WRCGYCKKSFRSEKYLDQHFDNrH 79
                 58*****************77666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.0585681IPR007087Zinc finger, C2H2
PROSITE patternPS0002805879IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MQLQGFIKTM TGMLMKCIVP EKEAGLLGRS LRRLHPDNDI YRDQEQHKIH VDINEWRCGY  60
CKKSFRSEKY LDQHFDNRHS NLLNISHSKC LADLCGALHC DLVTDFKAKK NKCNPSASAR  120
NKHLCEGLAD KCFPINQGPS ANRLHELFLR QFCDAHTCSG GHKPFSRGSK KHTSIFYLVI  180
SILTSLLVAI FYIVVYVYRR TAKDLNASHD GDKSQNHHSA SFSGVHQVTC KIENSDHEDL  240
IVMKLKKILE TP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231415.11e-123PREDICTED: uncharacterized protein LOC108205832
RefseqXP_017231416.11e-123PREDICTED: uncharacterized protein LOC108205832
TrEMBLA0A166EJ250.0A0A166EJ25_DAUCS; Uncharacterized protein
STRINGXP_009616977.11e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80841216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-82C2H2-like zinc finger protein