PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006987
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 477aa    MW: 53140.8 Da    PI: 6.5602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006987genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13297342454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++Ns+f  Lr ++P+       K++Ka+ L  Av YI++L
  DCAR_006987 297 NHVEAERQRREKLNSKFYALRAVVPHV-----SKMDKASLLGDAVSYINNL 342
                  799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-3343208IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.74E-14292347No hitNo description
SuperFamilySSF474591.06E-18292369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.99293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-17297353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-16299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEDHQNLLVS SSSSSSMLEL DVENGHYYYP TFSSTPSSSH HLELKHLLET HPCWCYVIFW  60
RSLNTVPPSS SSELVLTWAD GHFRSSSSAA DDKKVVQGKR SDSRELYALF DMESSDVDGN  120
DPEWFYLNSI SRSLPAGGAA AKAFISGNYV WLDGYQELGR FECERAREAL IHGIRTMICF  180
PTAHGVVEMG SSVRINHDLV LVEKIKSLIG SSSSSISTGE LERSARLGSV QEQQDKGLFR  240
DMCKNVKEFD DYDVEKFPKF EIVNFANTND RNDTAKIQKV GKKRGRKPSV GKDRPINHVE  300
AERQRREKLN SKFYALRAVV PHVSKMDKAS LLGDAVSYIN NLRTKVEELE SQVLMSPKNH  360
PPPPPPPQHL NASSTSTGTV SDFEEATAIS TDDDEVEVRL VGTDAMIRVR CKNTNHPGAK  420
LMDALRQLEL QVNHASMSSF DHLMLIDVVI KVPSRGCLQT EDALRRAILS SFSTST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-24290354165Transcription factor MYC2
5gnj_B2e-24290354165Transcription factor MYC2
5gnj_E2e-24290354165Transcription factor MYC2
5gnj_F2e-24290354165Transcription factor MYC2
5gnj_G2e-24290354165Transcription factor MYC2
5gnj_I2e-24290354165Transcription factor MYC2
5gnj_M2e-24290354165Transcription factor MYC2
5gnj_N2e-24290354165Transcription factor MYC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233571.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A166E6840.0A0A166E684_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-51bHLH family protein