PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006575
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 179aa    MW: 19561.9 Da    PI: 5.3105
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006575genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-202272155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++++GVr ++ +gr++AeIrdp   +k+ r++lg+f+taeeAa a++aa+++++g
  DCAR_006575 22 PHFRGVRKRP-WGRYAAEIRDP---NKKNRVWLGTFDTAEEAAMAYDAAARSFRG 72
                 689*******.**********9...3369**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-192280No hitNo description
PfamPF008473.0E-142272IPR001471AP2/ERF domain
SMARTSM003803.5E-352386IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-222380IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-322381IPR001471AP2/ERF domain
PROSITE profilePS5103223.2882380IPR001471AP2/ERF domain
PRINTSPR003671.1E-102435IPR001471AP2/ERF domain
PRINTSPR003671.1E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAPKERTAPP LTTKPSTTLK QPHFRGVRKR PWGRYAAEIR DPNKKNRVWL GTFDTAEEAA  60
MAYDAAARSF RGVNAKTNFP RADEIFDINY NLTGIYTTSH CMKDVHGSVS QSSTVESESD  120
ETLDLTLGFT GEWAVNGGSC KVNGCSLNDS EESSVVIDLK LSMGEFNIDL NALPAPEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212080263ATERF1
3gcc_A2e-212080263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234597.11e-132PREDICTED: ethylene-responsive transcription factor 11-like
TrEMBLA0A166DVJ61e-131A0A166DVJ6_DAUCS; Uncharacterized protein
STRINGVIT_10s0003g00140.t013e-34(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-24erf domain protein 9