PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006551
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 483aa    MW: 53751.6 Da    PI: 6.5136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006551genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12299345354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h e+Er RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L
  DCAR_006551 299 QNHVEAERLRREKLNHRFYALRSVVPNV-----SRMDKASLLGDAVTYIKEL 345
                  68*************************6.....4****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.6E-4124206IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.793296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-17299359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-16299360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.50E-14299349No hitNo description
PfamPF000108.7E-10299345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-16302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEDIISSSSS SSFLCHGNPS PTIQQRLQFI LQNRPEWWMY YIFWQTSKDN ATDRLVLSWG  60
DGQFRGSKDS MLKPTNASNV GFELEQRKVA KGIQSLFTDT ITSGVDGVVV DTEFPDSEWF  120
FMVSATRSFL AGDDNIVGRA FSSGTYVWLA GDEELQFNAC DRAKEAYLQG VKTLVCISTP  180
CGIIELGSSY AIKEDWGLVH LAKSVFCPDN TNMNMSTSPN QSLSLLDINA GYPREHIKST  240
NSGGDEDIAK QTKMTRSSSY LGNSGFESPL DIHHDTTMCT RSFNKRGRRT VASGRELAQN  300
HVEAERLRRE KLNHRFYALR SVVPNVSRMD KASLLGDAVT YIKELKSKVD ELDGKLREEV  360
RKSKYTTDAV YHDTCATQST STTTHAYNAA AARSTVLNYG PIQMEVDIKI LGSQAMIHVQ  420
SSDVNYPWAR LMDALRMLEF RVHHASVSSV KDLILQDIVI KVPDGLTNEE GLKSAILATL  480
QI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-30222068192Transcription factor MYC3
4rqw_B2e-30222068192Transcription factor MYC3
4rs9_A2e-30222068192Transcription factor MYC3
4yz6_A2e-30222068192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232647.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A166DUY40.0A0A166DUY4_DAUCS; Uncharacterized protein
STRINGcassava4.1_024442m1e-140(Manihot esculenta)
STRINGXP_006439218.11e-140(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-78bHLH family protein