PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 493aa    MW: 54678.8 Da    PI: 6.7398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006550genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.59e-12318364354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h e+Er RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L
  DCAR_006550 318 QNHVEAERLRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVTYINEL 364
                  68*************************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-4224216IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.361315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-16318378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.26E-14318369No hitNo description
PfamPF000102.2E-9318364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-16318380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-15321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEDLISSSSS SSFLCHGGAS PTIQQRLQFI MQSRPEWWMY YIFWQTSKDN STDRLVLSWG  60
DGHFRGNKDF MLKAANSNIG LGPQDQPQQP HPKFGFELER RKVAKGIQSL FTDSLPGIDG  120
VVEADFPDSE WFFMVSVTRS FAAGEDNTVG QAYSSGSYVW LAGDHELQFQ NCDRAKEAYL  180
HGIKTLVCIS TPYGIIELGS SYVIKEDWGL IHLAKSLCSP DNNGTNNMPI SNMSSPGAIA  240
YAPPQNSTRS LSFFDINAVS GDEEGNVKPE KKLTKGGRSS SDSGNSDFES TLAPDSSMTT  300
RMKKRGRNGA MSGRDLAQNH VEAERLRREK LNHRFYALRS VVPNVSRMDK ASLLADAVTY  360
INELKSKVED LDGKLRQEMK KSKCITDVLY DTQSTCTNVY HTARSSVTYG PVNMEVDVKI  420
LGSQAMIRVQ SPDVNYPAAR LMDALRLLEF RIHHASVSSV KEIMLQDVVI KVPDGLTSED  480
ALKTMLLSTL QM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-30222178191Transcription factor MYC3
4rqw_B1e-30222178191Transcription factor MYC3
4rs9_A1e-30222178191Transcription factor MYC3
4yz6_A1e-30222178191Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232903.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A162ATL00.0A0A162ATL0_DAUCS; Uncharacterized protein
STRINGcassava4.1_024442m1e-157(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-70bHLH family protein