PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006477
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 468aa    MW: 51401.4 Da    PI: 8.6166
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006477genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2301.3e-09147190155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr      d      + k+++lg f+ta  Aa+a+++a+ k++g
  DCAR_006477 147 SQYRGVTFYRRTGR------D------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 190
                  78************......5......56**********************99987 PP

2AP240.37.8e-13233283155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ + +g
  DCAR_006477 233 SKFRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDSEIEAARAYDKAAIECNG 283
                  79********.7******...5...334336**********99**********98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.918138198IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-10147199IPR016177DNA-binding domain
SMARTSM003801.1E-21148204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-10163198IPR001471AP2/ERF domain
CDDcd000181.56E-24233293No hitNo description
SuperFamilySSF541719.15E-16233292IPR016177DNA-binding domain
PfamPF008471.2E-8233283IPR001471AP2/ERF domain
SMARTSM003801.7E-30234297IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-15234292IPR001471AP2/ERF domain
PROSITE profilePS5103215.092234291IPR001471AP2/ERF domain
PRINTSPR003671.9E-5235246IPR001471AP2/ERF domain
PRINTSPR003671.9E-5273293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLDLNIDTSS AQYKTVEQQN SSVQNVLEAS VSGTSVSSVV NADEAPASSG ESIAAFGFNM  60
LFEKKCDRNG GSSPGLPELQ LFPVIGGELS NETASSKSLL RPEWLNLSVP EAPMDYRVKM  120
MEEKPPPPVV VQPAVKKSRR GPRSRSSQYR GVTFYRRTGR DCGKQVYLGG FDTAHAAARA  180
YDRAAVKFRG IDADINFTIS DYEDDLKQMK DLTKEEFVQI LRRQSTGFSR GSSKFRGVTL  240
HKCGRWEARM GQLLGKKYVY LGLFDSEIEA ARAYDKAAIE CNGREAVTNF ESSNYEAEVT  300
MSNNNKDRHH DLELNLSIGS LKGNDNMRSM QLNEATYELT NSGKRSKVET FFSAPTREET  360
SRATVASKQN PTWPSIYTTF APNYEDRATR KPEAEAGPSL GFTNWAWQMN GQGIVTPVPL  420
FSTAASSGFS STTPLFSGTL LQSNAQNKKL CVPSPANGTP LYYGGKN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237047.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ8H4432e-94AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A166DT170.0A0A166DT17_DAUCS; Uncharacterized protein
STRINGGorai.009G104200.11e-122(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-87related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]