PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bZIP
Protein Properties Length: 446aa    MW: 49175.1 Da    PI: 7.4176
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006160genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.6e-10196233744
                  HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                   rr+++NReAAr+sR+RKka++++Le+    L++  ++
  DCAR_006160 196 LRRLAQNREAARKSRLRKKAYVQQLETSRIRLSQLEQD 233
                  59************************876666665555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-4189253IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.554192236IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-6196236No hitNo description
PfamPF001704.3E-7197234IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-7197238No hitNo description
PROSITE patternPS000360197212IPR004827Basic-leucine zipper domain
PfamPF141442.9E-17260297IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGSHRVGDTG LSNSGASNIH HYHHHIPYAV PHGLPPLNTN FINHQEGSAF DFGELEEAIV  60
LQNLKLNHDD SKLSFYTAKP AATLEMFPSW PMKLQQTPGG SSRSGGESTD SGLAVNTLSS  120
KAGGHLEPES PVSTKLSCDH QQAFDHNHLQ FPQENHHNHQ QQQLQAVEMA GDSPRSSSGP  180
SQTQPSSNTI LEKVTLRRLA QNREAARKSR LRKKAYVQQL ETSRIRLSQL EQDLQRARSQ  240
GLFLGGGSGG NAGSSMSPGV AAKSDVFHLI TGLWTTPAER CFLWMGGFRP SELIKTLIAQ  300
MDPLTEQQLV GIYSLQHSSQ QAEEALSQGL EQLQQSLIDT IANGSINDGM HHMAVALGKL  360
TNLEGFVRQA DNLRQQTLHQ LRRILTVRQA ARCFLIIGEY YARLRALSSL WASRPRESMM  420
SEENSCQPIT DMHMMQSSQN QYGSF*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232169.10.0PREDICTED: transcription factor TGA2-like
SwissprotQ93XM61e-155TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A162ASL70.0A0A162ASL7_DAUCS; Uncharacterized protein
STRINGEOY334490.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36832340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.27e-90bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]