PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005894
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 371aa    MW: 41226.8 Da    PI: 8.544
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005894genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.8e-07138161123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y+C++Cg+ F r+s L++H++t H
  DCAR_005894 138 YPCQICGEIFQRPSVLEQHQSTrH 161
                  99*******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.408138166IPR007087Zinc finger, C2H2
PROSITE patternPS000280140161IPR007087Zinc finger, C2H2
SuperFamilySSF563994.12E-15163369No hitNo description
Gene3DG3DSA:3.90.228.102.2E-4181279IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.108.1E-6310369IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAIFKNFFSL FLVFLHLACF SFTSTRKRTK PTSSPLSLHS TSNSHSRLKL IKSHRAFSFL  60
KHIFSSHSSK AVAQPGRTHP NPSIGSPCSS TRSLRHSSIF SVIPNHAFAD DPEYPTRKTA  120
GSIPDSEFSS DTVRNDIYPC QICGEIFQRP SVLEQHQSTR HAVSELVDGD SGKNIVLIIF  180
NSGWTNRIKE PIIYRILKIH NGSRSLNRFE EYRESVKSKA SRHGGTCRRD ERCIADGNEL  240
LRFHCTTFLC DLGQNGNSSI CNQQYCSVCG IIKSGFSSKL DGIATVSTSW RAHVAIPEDI  300
EEEFSFLNLK RAMLVCRVIA GRVGCDPAVA DKEDPGYDSL MGPGRVGEED ELLVYNPRAV  360
LPCFVIVYTV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232025.10.0PREDICTED: uncharacterized protein LOC108206290
TrEMBLA0A161Y6M60.0A0A161Y6M6_DAUCS; Uncharacterized protein
STRINGXP_009630930.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-103C2H2 family protein