PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005239
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 401aa    MW: 45246.9 Da    PI: 6.3751
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005239genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.32.9e-3097195393
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssssasns 85 
                  g+kdrh k+ T++g+RdRRvRlsa++a++f+d+qd+LGfd++s++i+WL+++a++ai +l ++                       ++ + +s+  n+
  DCAR_005239  97 GGKDRHCKVATSKGLRDRRVRLSANTAIEFYDVQDRLGFDRASNAIDWLMKEAEAAISALGKDlplaqlpyyyanketH-------QQMQLQSNFLNP 187
                  68************************************************************98887665554322110.......111222222222 PP

          TCP  86 ssgkaaks 93 
                  + + ++++
  DCAR_005239 188 EFSIHRSD 195
                  22222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.88398156IPR017887Transcription factor TCP subgroup
PfamPF036342.1E-2998182IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSIQKQKAES SNVVQCVLPD GENRDHCQAY SEPPQQRRLN GKAVIDDYWL KSDQKYIGNT  60
RFRERVHGCD EHEEAALNVC FKRARGDRES FIPRLGGGKD RHCKVATSKG LRDRRVRLSA  120
NTAIEFYDVQ DRLGFDRASN AIDWLMKEAE AAISALGKDL PLAQLPYYYA NKETHQQMQL  180
QSNFLNPEFS IHRSDQHHFN DNPDENLSFI SLLGGSNSSN SVAFPDYQHG FDPRIRNQNQ  240
DSCLSLQSFQ DDPTILQQNL SPFSLAEHDN SISLGPSPII NFNASPNPRW FHKVADRNST  300
SKLRVLDSTE GPFLQQSEMC FQGESIQSTF IPSTNNSPSR RDYDWMPLLN TSSVTRTGLV  360
YNELSNSAVI RGQGETTKPI ASSSSAANAF LHYQDYQNQD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-15104156254Putative transcription factor PCF6
5zkt_B2e-15104156254Putative transcription factor PCF6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A166CVV00.0A0A166CVV0_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.16e-24TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3